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<article dtd-version="1.1" xml:lang="en" xmlns="http://jats.nlm.nih.gov" xmlns:ns2="http://www.w3.org/1999/xlink" xmlns:ns4="http://www.niso.org/schemas/ali/1.0/" xmlns:ns3="http://www.w3.org/1998/Math/MathML">
    <front>
        <journal-meta>
            <journal-id>OENO One</journal-id>
            <issn>2494-1271</issn>
        </journal-meta>
        <article-meta>
            <title-group>
                <article-title xml:lang="war">Rugulopteryx okamurae extract provides protection against Plasmopara viticola</article-title>
            </title-group>
            <contrib-group>
                <contrib contrib-type="dc:creator">
                    <name>
                        <surname>Cantos-Villar</surname>
                        <given-names>Emma</given-names>
                    </name>
                    <email>emma.cantos@juntadeandalucia.es</email>
                    <xref ref-type="aff" rid="aff1">
                        <sup>1</sup>
                    </xref>
                </contrib>
                <contrib contrib-type="dc:contributor">
                    <name>
                        <surname>Amaia</surname>
                        <given-names/>
                    </name>
                </contrib>
                <contrib contrib-type="dc:contributor">
                    <name>
                        <surname>-Petite</surname>
                        <given-names>Mena-</given-names>
                    </name>
                    <xref ref-type="aff" rid="aff2">
                        <sup>2</sup>
                    </xref>
                </contrib>
                <contrib contrib-type="dc:contributor">
                    <name>
                        <surname>M. Díez-Navajas</surname>
                        <given-names>Ana</given-names>
                    </name>
                    <email>adiez@neiker.eus</email>
                    <xref ref-type="aff" rid="aff3">
                        <sup>3</sup>
                    </xref>
                </contrib>
                <contrib contrib-type="dc:contributor">
                    <name>
                        <surname>Cretazzo</surname>
                        <given-names>Enrico</given-names>
                    </name>
                    <email>enrico.cretazzo@juntadeandalucia.es</email>
                    <xref ref-type="aff" rid="aff1">
                        <sup>1</sup>
                    </xref>
                </contrib>
                <contrib contrib-type="dc:contributor">
                    <name>
                        <surname>Lacuesta</surname>
                        <given-names>Maite</given-names>
                    </name>
                    <email>maite.lacuesta@ehu.eus</email>
                    <xref ref-type="aff" rid="aff2">
                        <sup>2</sup>
                    </xref>
                </contrib>
                <contrib contrib-type="dc:contributor">
                    <name>
                        <surname>Miranda-Apodaca</surname>
                        <given-names>Jon</given-names>
                    </name>
                    <email>jon.miranda@ehu.eus</email>
                    <xref ref-type="aff" rid="aff4">
                        <sup>4</sup>
                    </xref>
                </contrib>
                <contrib contrib-type="dc:contributor">
                    <name>
                        <surname>Pérez-López</surname>
                        <given-names>Usue</given-names>
                    </name>
                    <email>usue.perez@ehu.eus</email>
                    <xref ref-type="aff" rid="aff4">
                        <sup>4</sup>
                    </xref>
                </contrib>
                <contrib contrib-type="dc:contributor">
                    <name>
                        <surname>José Córdoba-Granados</surname>
                        <given-names>Juan</given-names>
                    </name>
                    <email>juanj.cordoba@juntadeandalucia.es</email>
                    <xref ref-type="aff" rid="aff1">
                        <sup>1</sup>
                    </xref>
                </contrib>
                <contrib contrib-type="dc:contributor">
                    <name>
                        <surname>Cámara</surname>
                        <given-names>Asier</given-names>
                    </name>
                    <email>asier.camara@ehu.eus</email>
                    <xref ref-type="aff" rid="aff5">
                        <sup>5</sup>
                    </xref>
                </contrib>
                <contrib contrib-type="dc:contributor">
                    <name>
                        <surname>Bertazzon</surname>
                        <given-names>Nadia</given-names>
                    </name>
                    <email>nadia.bertazzon@crea.gov.it</email>
                    <xref ref-type="aff" rid="aff6">
                        <sup>6</sup>
                    </xref>
                </contrib>
                <contrib contrib-type="dc:contributor">
                    <contrib-id contrib-id-type="orcid">https://orcid.org/0000-0002-0615-0187</contrib-id>
                    <name>
                        <surname>Zarraonaindia</surname>
                        <given-names>Iratxe</given-names>
                    </name>
                    <email>iratxe.zarraonaindia@ehu.eus</email>
                    <xref ref-type="aff" rid="aff5">
                        <sup>5</sup>
                    </xref>
                    <xref ref-type="aff" rid="aff7">
                        <sup>7</sup>
                    </xref>
                </contrib>
                <contrib contrib-type="dc:contributor">
                    <name>
                        <surname>Cantos-Villar</surname>
                        <given-names>Emma</given-names>
                    </name>
                    <email>emma.cantos@juntadeandalucia.es</email>
                </contrib>
                <contrib contrib-type="dc:contributor">
                    <name>
                        <surname>Mena-Petite</surname>
                        <given-names>Amaia</given-names>
                    </name>
                    <email>amaia.mena@ehu.eus</email>
                </contrib>
                <contrib contrib-type="dc:contributor">
                    <name>
                        <surname>Díez-Navajas</surname>
                        <given-names>Ana M.</given-names>
                    </name>
                    <email>adiez@neiker.eus</email>
                </contrib>
                <contrib contrib-type="dc:contributor">
                    <name>
                        <surname>Cretazzo</surname>
                        <given-names>Enrico</given-names>
                    </name>
                    <email>enrico.cretazzo@juntadeandalucia.es</email>
                </contrib>
                <contrib contrib-type="dc:contributor">
                    <name>
                        <surname>Lacuesta</surname>
                        <given-names>Maite</given-names>
                    </name>
                    <email>maite.lacuesta@ehu.eus</email>
                </contrib>
                <contrib contrib-type="dc:contributor">
                    <name>
                        <surname>Miranda-Apodaca</surname>
                        <given-names>Jon</given-names>
                    </name>
                    <email>jon.miranda@ehu.eus</email>
                </contrib>
                <contrib contrib-type="dc:contributor">
                    <name>
                        <surname>Pérez-López</surname>
                        <given-names>Usue</given-names>
                    </name>
                    <email>usue.perez@ehu.eus</email>
                </contrib>
                <contrib contrib-type="dc:contributor">
                    <name>
                        <surname>Córdoba-Granados</surname>
                        <given-names>Juan José</given-names>
                    </name>
                    <email>juanj.cordoba@juntadeandalucia.es</email>
                </contrib>
                <contrib contrib-type="dc:contributor">
                    <name>
                        <surname>Cámara</surname>
                        <given-names>Asier</given-names>
                    </name>
                    <email>asier.camara@ehu.eus</email>
                </contrib>
                <contrib contrib-type="dc:contributor">
                    <name>
                        <surname>Bertazzon</surname>
                        <given-names>Nadia</given-names>
                    </name>
                    <email>nadia.bertazzon@crea.gov.it</email>
                </contrib>
                <contrib contrib-type="dc:contributor">
                    <contrib-id contrib-id-type="orcid">https://orcid.org/0000-0002-0615-0187</contrib-id>
                    <name>
                        <surname>Zarraonaindia</surname>
                        <given-names>Iratxe</given-names>
                    </name>
                    <email>iratxe.zarraonaindia@ehu.eus</email>
                </contrib>
            </contrib-group>
            <aff id="aff1">
                <sup>1</sup>IFAPA Rancho de la Merced, Consejería de Agricultura, Pesca, Agua y Desarrollo Rural, Junta de Andalucía, 11471 Jerez de la Frontera, Cádiz, Spain.</aff>
            <aff id="aff2">
                <sup>2</sup>Department of Plant Biology and Ecology, Faculty of Pharmacy, University of the Basque Country (UPV/EHU), Vitoria-Gasteiz (Araba), Spain.</aff>
            <aff id="aff3">
                <sup>3</sup>Department of Plant Production and Protection, NEIKER-Basque Institute of Agricultural Research and Development, Basque Research and Technology Alliance (BRTA), Campus Agroalimentario de Arkaute, 01192 Arkaute (Araba), Spain.</aff>
            <aff id="aff4">
                <sup>4</sup>Department of Plant Biology and Ecology, Faculty of Science and Technology, University of the Basque Country (UPV/EHU), Leioa (Bizkaia), Spain.</aff>
            <aff id="aff5">
                <sup>5</sup>Department of Genetics, Physical Anthropology and Animal Physiology, Faculty of Science and Technology, University of the Basque Country (UPV/EHU), Leioa (Bizkaia), Spain</aff>
            <aff id="aff6">
                <sup>6</sup>CREA, Research Centre for Viticulture and Enology, 31015 Conegliano, Italy.</aff>
            <aff id="aff7">
                <sup>7</sup>IKERBASQUE, Basque Foundation for Science, Bilbao, Spain.</aff>
            <pub-date date-type="created">
                <day>6</day>
                <month>1</month>
                <year>2025</year>
            </pub-date>
            <permissions/>
            <kwd-group>
                <kwd>Plasmopara</kwd>
                <kwd>viticola</kwd>
                <kwd>genes</kwd>
                <kwd>soil</kwd>
                <kwd>microbiota</kwd>
                <kwd>antioxidant</kwd>
                <kwd>enzymes</kwd>
                <kwd>clone</kwd>
                <kwd>Rugulopteryx</kwd>
                <kwd>okamurae</kwd>
                <kwd>sustainability.</kwd>
                <kwd>Downey mildew</kwd>
                <kwd>genes</kwd>
                <kwd>antioxidant enzymes</kwd>
                <kwd>stilbenes</kwd>
                <kwd>Vitis vinifera var. Tempranillo</kwd>
                <kwd>clones</kwd>
                <kwd>algae</kwd>
                <kwd>circular economy</kwd>
            </kwd-group>
        </article-meta>
    </front>
    <body>
        <sec id="h0-introduction">
            <title>Introduction</title>
            <p>Viticulture is a sector with great socio economic importance worldwide, the largest cultivated area being in Europe and the top wine producing countries being Italy, France and Spain (OIV, 2023, 
                <ext-link ext-link-type="uri" ns2:href="https://www.oiv.int/what-we-do/global-report?oiv">https://www.oiv.int/what-we-do/global-report?oiv</ext-link>). However, grapevine development and production are increasingly subject to a biotic (drought, salt, mineral nutrition disturbances, light and temperature) and biotic (wounding, pathogens and herbivores) stress, all of which contribute to the overuse of chemical fertilisers and synthetic pesticides (
                <xref ref-type="bibr" rid="ref56">Samuels et al., 2022</xref>). Therefore, there is a need and an increasing demand for more ecologically-sustainable agricultural products, as outlined by the United Nations Sustainable Development Goals (SDGs). Within this framework, the “From Farm to Fork” strategy aims to reduce chemical usage and promote sustainability, one of its objectives being to achieve 25 % of agricultural land under organic production by 2030.</p>
            <p>Grapevine plants are among the most frequently treated crops due to their high susceptibility to a number of pathogens, particularly fungi and oomycete. 
                <italic>Plasmopara</italic> 
                <italic>viticola (P. viticola) </italic>(Berk. &amp; M.A. Curtis; Berl. &amp; De Toni) a biotrophic oomycete, the causal agent of grapevine downy mildew, is one of the most devastating diseases in vineyards worldwide. The incidence of downy mildew has increased notably in recent years in Europe (
                <xref ref-type="bibr" rid="ref34">Koledenkova et al., 2022</xref>). While most commercially important European grapevine cultivars (
                <italic>Vitis vinifera</italic>) are highly susceptible to this pathogen, differences in level of sensitivity to it have been documented (
                <xref ref-type="bibr" rid="ref8">Boso et al., 2014</xref>). 
                <italic>P. viticola</italic> severely attacks ﬂower clusters, leaves and young berries, and is therefore controlled with frequent applications of chemical fungicides and copper-based formulations to avoid decreases in yield and quality. Depending on the meteorological conditions, up to twelve fungicide applications per growing season may be necessary to control it. The use of copper can cause environmental problems owing to its accumulation in the soil, with negative side effects, such as decreases in yield and soil microbial diversity (
                <xref ref-type="bibr" rid="ref22">Gessler et al., 2011</xref>; 
                <xref ref-type="bibr" rid="ref36">Lamichhane et al., 2018</xref>). Despite its unfavourable ecotoxicological proﬁle, the use of copper is still tolerated for its unique properties as a wide-spectrum fungicide and bactericide. However, restrictions have been applied by the European Commission on the number of pesticide treatments (Directive 2009/128/EC, http://data.europa.eu/eli/dir/2009/128/oj) and on the maximum allowed quantity per year of copper fungicides (Regulation 2002/473/EC, http://data.europa.eu/eli/reg/2002/473/oj). Moreover, copper, which is still considered the most important antifungal product in organic viticulture, has been added to the list of candidates for substitution (European Commission Implementing Regulation 2018/84, http://data.europa.eu/eli/reg_impl/2018/84/oj), and has been further limited to 4 kg per hectare/year spread over 7 years from February 2019 (European Commission Implementing Regulation 2018/1981, 
                <ext-link ext-link-type="uri" ns2:href="http://data.europa.eu/eli/reg_impl/2018/1981/oj">http://data.europa.eu/eli/reg_impl/2018/1981/oj</ext-link>). </p>
            <p>The application of environmentally friendly products has become increasingly important in the last few years. Biofungicides, biostimulants and resistance inducers are sustainable biocontrol products that are being currently studied to counteract the overuse of chemical fungicides (
                <xref ref-type="bibr" rid="ref33">Jindo et al., 2022</xref>). Among biostimulants, the use of seaweed extracts is increasing. The application of algal extracts has been shown to stimulate defense mechanisms and plants growth (
                <xref ref-type="bibr" rid="ref11">Cappelletti et al., 2016</xref>; 
                <xref ref-type="bibr" rid="ref20">García-Sánchez et al., 2022</xref>; 
                <xref ref-type="bibr" rid="ref26">Gutiérrez‐Gamboa et al., 2019</xref>). In viticulture in particular, foliar applications have been proven to improve grape and wine composition (
                <italic>i.e</italic>., nitrogen, phenolic and volatile contents (
                <xref ref-type="bibr" rid="ref26">Gutiérrez‐Gamboa et al., 2019</xref>; 
                <xref ref-type="bibr" rid="ref33">Jindo et al., 2022</xref>; 
                <xref ref-type="bibr" rid="ref54">Rantsiou et al., 2020</xref>). However, information regarding the effects of using seaweed extract for the prevention of grapevine fungal diseases is scarce. When used in several foliar treatments on grapevine, a crude extract of the green seaweed 
                <italic>Ulva armoricana</italic>, rich in the polysaccharide ulvan, showed anti-powdery mildew activity (90 % reduction of symptoms) (
                <xref ref-type="bibr" rid="ref31">Jaulneau et al., 2011</xref>). In fact, defense mechanism activation related to the jasmonic acid pathway has been related to ulvan (
                <xref ref-type="bibr" rid="ref30">Jaulneau et al., 2010</xref>; 
                <xref ref-type="bibr" rid="ref31">Jaulneau et al., 2011</xref>). The treatment of grapevine plants with laminarin, a polysaccharide from the brown algae 
                <italic>Laminaria digidata</italic>, reduced the infection of 
                <italic>Botrytis cinerea</italic> and 
                <italic>P. viticola</italic> by 55 % and 75 %, respectively (
                <xref ref-type="bibr" rid="ref4">Aziz et al., 2003</xref>). Gauthier 
                <italic>et al</italic>. (2014) and Pagliarani 
                <italic>et al</italic>. (2020) have provided insights into the modifications that occur within molecular pathways related to resistance following seaweed extract applications in studies that applied “omics'' technologies, microarray analysis and high throughput sequencing, respectively. The defense mechanisms that are activated under pathogen stress vary, depending on the sensitivity of the grapevine genotypes to the disease (
                <xref ref-type="bibr" rid="ref42">Molitor et al., 2018</xref>; 
                <xref ref-type="bibr" rid="ref46">Nogueira Júnior et al., 2020</xref>; 
                <xref ref-type="bibr" rid="ref2">Adrian et al., 2024</xref>), and thus the elicitation of plant response by plant protection products or biostimulants can vary depending on the plant’s genetic background (
                <xref ref-type="bibr" rid="ref23">Godínez-Mendoza et al., 2023</xref>).</p>
            <p>Recently, an aqueous extract from 
                <italic>Rugulopteryx</italic> 
                <italic>okamurae (R. okamurae)</italic> - an invasive brown alga that has had a huge negative environmental, social and economic impact on the Andalusian coast (southern Spain) - was found to be a grapevine biostimulant under greenhouse conditions (
                <xref ref-type="bibr" rid="ref61">Zarraonaindia et al., 2023</xref>). The extract induced grapevine defense by the expression of immunity genes and secondary metabolites, such as stilbenes, phytohormones and antioxidant enzymes, which are involved in protecting Tempranillo plants from stress and increasing their resistance to it.  Additionally, the fungal community composition of the leaves was altered following the treatment, and an increase in the abundance of several beneficial genera known for their antifungal or antagonistic properties occurred in the treated grapevines. However, it remains to be studied whether the elicitation by the extract could indeed provide protection for grapevines against fungi and oomycetes. In addition, while variations to downy mildew resistance have been previously evidenced, even between clones of the same grapevine variety (
                <xref ref-type="bibr" rid="ref6">Boso et al., 2006</xref>), a very limited number of studies have addressed these differences and unraveled the underlying mechanisms. To address these gaps in knowledge, the objective of the present study was to assess the efficacy of a 
                <italic>R. okamurae</italic> aqueous extract in inducing resistance to 
                <italic>P. viticola</italic> in two clones of 
                <italic>Vitis vinifera </italic>L. cv. Tempranillo. The molecular and metabolic responses of the clones together with the changes to plant physiology were investigated after i) 
                <italic>R. okamurae</italic> extract applications, and ii) 
                <italic>P. viticola</italic> inoculation. In addition, the efficiency of the treatments for protecting the grapevines from downy mildew disease was assessed. The differential response of each of the clones to the treatments is discussed here, shedding more light on the influence of the interaction between genotype and elicitor on level of plant protection. </p>
        </sec>
        <sec id="h1-materials-and-methods">
            <title>Materials and methods</title>
            <sec id="h0-1--rugulopteryx-okamurae-extract-elaboration-and-biochemical-characterization">
                <title>1. 
                    <italic>Rugulopteryx</italic> 
                    <italic>okamurae</italic> extract elaboration and biochemical characterization</title>
                <p>The brown macroalgae 
                    <italic>R. okamurae</italic> (Div. Phaeophyta, O. Dictyotales) was collected from Algeciras (Cadiz, Spain, 5° 25′ 34.75′′ W, 36° 4′ 37.56′′ N) in April 2022. After harvesting, the seaweed biomass was washed with desalinised water to remove epiphytes and salt, then drained and frozen at −80 °C, and freeze-dried (Cryodos, Telstar, Spain). To produce the extracts, batches of 50 g of freeze-dried 
                    <italic>R. okamurae</italic> were combined with 500 mL of milliQ water and subjected to vigorous shaking in a thermoshaker at 70 ºC for 2 h. The product was centrifuged, the supernatant stored and the solid phase mixed once more with 500 miliQ water and then shaken for 2 h at 70 ºC and centrifuged again. The two liquid phases resulting from the centrifugations were combined, frozen and then lyophilised. The composition of the aqueous extract was characterised. Briefly, ash content, CNS content, macronutrients (Ca, K, Mg, P), micronutrients (Si, Cl, Fe, Mn, Br, Cu, Zn), ashes, total proteins, total lipids and total carbohydrate were analysed according to Zarraonaindia 
                    <italic>et al</italic>. (2023) (Table S1).</p>
            </sec>
            <sec id="h2-2--experimental-design">
                <title>2. Experimental design</title>
                <sec id="h0-2-1--biostimulation-and-infection">
                    <title>2.1. Biostimulation and infection</title>
                    <p>Two clones of 
                        <italic>Vitis vinifera</italic> L. cv. Tempranillo plants (VN40 and RJ43) grafted on Richter-110 rootstock were provided by two commercial nurseries (Vitis Navarra and Viveros Villanueva, Navarra, Spain, respectively). The plants (n = 30 per clone) were grown in a containment level 2 greenhouse (NCB2), in 5 L pots containing an enriched nutrient substrate of organic matter (90 %), sphagnum peat (160 g/L), calcium carbonate (7 g/L), NPK fertiliser (1.5 g/L) and trace elements (PotgrondH, Klasmann-Deilmann GmbH, Germany). The plants were grown for 2 months, with a 16 h day/8 h night photoperiod at an average room temperature of 18 ºC and were irrigated to field capacity when necessary.</p>
                    <p>When the plants had 10 to 12 fully expanded leaves, they were treated with either 
                        <italic>R. okamurae</italic> extract (RO, 6 g/L), water (W) or copper (BB, cuprous oxide 4.2 g/L, Nordox 75 WG, NordoxIndustrier, Oslo, Norway) spraying 3 times on leaves once every 48 hours (Figure 1). The soil in the pots was protected from the rinse with filter paper during each application. Ten plants were used per treatment type and clone type. To all the treatments (W, BB, RO) 0,1 % Retenol (Daymsa, Zaragoza, Spain) was added as a coadjutant.</p>
                    <p/>
                    <p>
                        <fig>
                            <caption/>
                            <caption>
                                <p>dPB= days post biostimulation, dPI= days post inoculation.</p>
                            </caption>
                            <graphic ns2:href="media/image1.png"/>
                        </fig>
                    </p>
                    <p>Forty-eight hours after the last treatment, all the plants (n = 60) were inoculated with a suspension of 
                        <italic>P. viticola</italic> sporangia by pulverisation on the abaxial side of the leaf with a manual hand sprayer (Figure 1). 
                        <italic>P. viticola</italic> isolate was collected in 2022 from a commercial vineyard (Etxano, Biscay, Spain), isolated and regularly multiplicated in the laboratory on detached leaves of 
                        <italic>V. vinifera</italic> cv Tempranillo until use. Sporangia concentration was quantified using a Thomahaemato cytometer (GMBH + CO KG, Germany) as described by Llamazares De Miguel 
                        <italic>et al.</italic> (2022). The sporangia was dissolved in commercial mineral water, and its concentration was adjusted to 5 x 10
                        <sup>4</sup> sporangia/ml. </p>
                </sec>
                <sec id="h3-2-2--sample-collection-and-analysis">
                    <title> 2.2. Sample collection and analysis</title>
                    <p>Three crucial time-points were studied: S
                        <sub>0</sub> sampling, the initial sampling prior to the application of the treatments (Day 0); S
                        <sub>1</sub> sampling, 24 h after foliar application of the last treatment, referred to as the biostimulation time-point (1 day post-biostimulation, 1dPB); S
                        <sub>2</sub> sampling, 24 h after 
                        <italic>P. viticola</italic> inoculation, referred to as the post-inoculation time-point (1dPI) (Figure 1).</p>
                    <p>To assess the initial physiological state of the plants, the photochemical parameters of the leaves and plant height were determined in S
                        <sub>0</sub> (n = 60 plants). At the biostimulation time-point (S
                        <sub>1</sub>, 1dPB), the 5th leaf (starting from the apex) was sampled, and a leaf from two plants was pooled to create five replicate samples per treatment type/clone. Leaves were milled in liquid nitrogen and were then used for gene expression and secondary metabolites analysis (including enzyme activity and polyphenols). The 7th leaf was used to study photochemical parameters in n=10 plants/treatment. In this case, while the same sampling approach was used 1 day after inoculation (S
                        <sub>2</sub>, 1dPI), the 4th and 6th leaf of two plants were pooled together for gene, polyphenol and enzyme analysis (n = 5 biological replicates per treatment/clone). In addition, disease development was evaluated by visual observation in all the treated plants (W, BB and RO, n = 60) at three different monitoring times: 3, 10 and 17 days after observing the first symptoms. Incidence and severity rates were measured as a percentage and then transformed into a 0–7 scale similar to the EPPO evaluations for the efﬁcacy evaluation of fungicides: a sporulation of 0 % was given a “0” value, a sporulation lower than 5 % a “1” value, a sporulation lower than 10 %  a “2” value, a sporulation lower than 25 % a “3” value, a sporulation lower than 50 % a “4” value, a sporulation lower than 75 % a “5” value, and a sporulation higher than 75 % a “6” value. Those values were transformed into a disease index (DI) using the Townsend-Heuberger formula (1943) to obtain the Incidence Disease Index and the Severity Disease Index, respectively.</p>
                </sec>
            </sec>
            <sec id="h2-3--gene-expression-analysis">
                <title>3. Gene expression analysis</title>
                <p>RNA was extracted with Spectrum
                    <sup>TM</sup> Plant Total RNA kit (Sigma-Aldrich Co., MI, USA), following the manufacturer’s instructions, from water-treated and RO-treated plants leaves at the S
                    <sub>1</sub> and S
                    <sub>2</sub> timepoints. For each biological replicate (n = 5 per treatment/clone), DNA was removed by On-Column DNase I Digestion Set (Sigma-Aldrich Co., MI, USA) during the extraction protocol. First-strand cDNAs were synthesised, starting from around 750 ng of total RNA, using the High Capacity cDNA Reverse Transcription kit (Applied Biosystems, Thermo Fisher Scientific Waltham, MA, USA) and following the manufacturer’s instructions. cDNA samples were analysed for gene expression using the INRAE BC2 Grape platform (
                    <ext-link ext-link-type="uri" ns2:href="https://bc2grape-inrae.fr/nos_services/neovigen">https://bc2grape-inrae.fr/nos_services/neovigen</ext-link>). The expression of genes was monitored by quantitative polymerase chain reaction (qPCR) using an implemented version of the NeoViGen microarray and a Fluidigm® de BioMark HD, following the protocol described by Dufour 
                    <italic>et al. </italic>(2016). The array contained five reference genes and a total of 89 targeted genes: 74 from Dufour 
                    <italic>et al</italic>. (2016) and 15 from Bodin 
                    <italic>et al</italic>. (2020). NADH and RNAse P were the negative and positive control, respectively. A list of the genes is provided in Table S2.</p>
                <p>The comparative Ct (2−ΔΔCt) method was used to calculate transcript expression levels, as all the genes showed similar amplification efficiencies (between 90 and 110 %). The gene expression profiles of RO-treated and water-treated (W) plants were compared 24 h after treatment application (S1) and 24 h after 
                    <italic>P. viticola</italic> inoculation (S2), respectively. To determine the significance of a differential gene expression, the fold change threshold was fixed at 1.5 or -1.5 (log transformed) and a one-way analysis of variance (ANOVA) was carried out in SPSS 15.0 (SPSS Corporation, Chicago, IL, USA) per gene; the ANOVA values were considered statistically significant when p &lt; 0.05. </p>
            </sec>
            <sec id="h2-4--polyphenol-analysis">
                <title>4. Polyphenol analysis</title>
                <p>Polyphenols were extracted from W, BB and RO leaves which had been collected in S1 and S2 following the method described by Krzyzaniak 
                    <italic>et al.</italic> (2018) with modifications. Briefly, 50 mg of freeze-dried powdered leaves was extracted using 10 mL of methanol and by shaking overnight at 4ºC. The supernatants were evaporated, redissolved in methanol:water (30:70), and then passed through a cartridge C
                    <sub>18</sub> (Scharlab, Spain) to clean up the samples. Polyphenols were eluted in methanol:water (90:10), concentrated under vacuum, redissolved in methanol:water (50:50), and finally filtered through a 0.22 µm filter (PTFE Teknokroma, Barcelona, Spain). For compound identification, 20 μL of the samples were analysed using a Waters HPLC system (Milford, MA, USA) equipped with a model 1525 pump, a W2707 injector and a Waters 2996 photodiode detector, and a Mediterranean Sea C18 column (Tecknokroma, Barcelona, Spain) (RP-18, 25 × 0.46 cm; 5 μm particle size), with a precolumn of the same material. Caftaric acids, coutaric acid, 
                    <italic>cis</italic>- and 
                    <italic>trans</italic>-piceid, and viniferins (e and d) were quantified at 320 nm with their respective standards; 
                    <italic>trans</italic>-Resveratrol was quantified at 306 nm as 
                    <italic>trans-</italic>resveratrol; 
                    <italic>cis</italic>-Piceid was quantified as 
                    <italic>cis</italic>-piceid with its respective standard generated by UVC treatment on 
                    <italic>trans</italic>-piceid. Quercetin 3-glucoside and quercetin-3-glucuronide were quantified at 360 nm as their respective standard. Concentrations were expressed in mg/L. </p>
                <p>A one-way analysis of variance (ANOVA) of the mean values was used to test for differences between time-points and treatments. Significant results (p ≤ 0.05) were then evaluated via the LSD test, using Statistix version 9.0 (Analytical Software, Tallahassee, FL, USA). </p>
            </sec>
            <sec id="h2-5--analysis-of-the-antioxidant-enzymes">
                <title>5. Analysis of the antioxidant enzymes </title>
                <p>The activity of the enzymes superoxide dismutase (SOD, EC 1.15.1.1), ascorbate peroxidase (APX, EC 1.11.1.11) and glutathione reductase (GR, EC 1.6.4.2) was determined as described in Pérez-López
                    <italic> et al</italic>. (2009). In summary, ground leaf tissue (40 mg fresh weight) of 5 replicates per treatment/clone was extracted using enzyme-specific buffers (0.6 mL per sample). The resulting homogenates were subjected to centrifugation at 16,100 g for 25 min. Superoxide dismutase (SOD) activity was determined via a spectrophotometric assay based on the reduction of ferricytochrome-c, utilising xanthine and xanthine oxidase as sources of superoxide radicals. One unit of SOD was defined as the amount of enzyme required to achieve a 50 % decrease in the ferricytochrome-c reduction rate. For the glutathione reductase (GR) assay, the activity was measured by monitoring the decrease in absorbance at 340 nm, corresponding to the NADPH oxidation dependent on oxidized glutathione (GSSG), at 25 °C. Ascorbate peroxidase (APX) activity was evaluated by tracking the ascorbate (ASA) oxidation at 290 nm. Statistical analysis was carried out using SPSS version 28.0 (IBM Corp, Armonk, NY, USA). The differences between the treatments were assessed via a one-way analysis of variance (ANOVA) on the mean values. When ANOVA indicated significant differences (p ≤ 0.05), Tukey’s post-hoc test was employed to compare the tested treatments.</p>
            </sec>
            <sec id="h2-6--photochemical-parameters">
                <title>6. Photochemical parameters</title>
                <p>Measurements of the photochemical efficiency of photosystem II (
                    <italic>φ
                        <sub>PSII</sub>
                    </italic>
                    <sub> </sub>
                    <italic>or</italic>
                    <sub> </sub>Fv/Fm) and the leaf chlorophyll level (SPAD index) were performed in situ at each sampling point (on the 5th leave in S
                    <sub>0</sub> and S
                    <sub>1, </sub>and on the 7th in S
                    <sub>2</sub>) using a FluorPen FP 100 fluorometer (Photon Systems Instruments, Brno, Czech Republic) and a Konica-Minolta SPAD-502 (n = 60 plants, n = 10 per treatment/clone). Chlorophyll a, chlorophyll b, carotenoids, xantophylls and phaeophytinization quotient chlorophyll a were determined in 0.7 cm diameter leaf discs from the 7th
                    <sup> </sup>leaf in S1 and S2. Statistical analysis was conducted in SPSS28.0 0 (IBM Corp. Armonk, NY: IBM Corp, USA) by means of an ANOVA and a Tukey´s test.</p>
            </sec>
        </sec>
        <sec id="h1-results-and-discussion">
            <title>Results and discussion</title>
            <sec id="h0-1--initial-state--s0----basal-differences-between-vn40-and-rj43-tempranillo-clones">
                <title>1. Initial state (S
                    <sub>0</sub>):  basal differences between VN40 and RJ43 Tempranillo clones</title>
                <p>Being the most widespread red variety in Spain, Tempranillo is well known throughout the world. In the present work, the two clones VN40 and RJ43 were assessed in order to gain a broader perspective of our findings. According to the commercial nurseries, the VN40 clone plants exhibit higher production but lower vigour and compactness than the RJ43 clone, which may be key aspects regarding infection development. </p>
                <p>During the two-month growing period in the greenhouse prior to biostimulation and pathogen inoculation, a delayed growth of the RJ43 clone was observed. Accordingly, in S
                    <sub>0</sub>, the measured development parameters (stem height, number of leaves, number of stems) showed that the RJ43 clone plants (n = 30) were less developed than the VN40 clone plants (n = 30) (Table S2), thereby already indicating differences in vegetative and phenological stages between these clones at this initial time-point. </p>
            </sec>
            <sec id="h2-2--biostimulation-state--s1--1dpb---responses-to-rugulopteryx-okamurae-extract--ro--application">
                <title>2. Biostimulation state (S
                    <sub>1</sub>, 1dPB): responses to 
                    <italic>Rugulopteryx</italic> 
                    <italic>okamurae</italic> extract (RO) application</title>
                <p>Grapevine leaves were sampled after three applications of water (W), copper (BB) and seaweed (RO) (S
                    <sub>1</sub>, 1dPB, Figure 1) to assess the metabolic response of the plants. At this sampling point, our results are compared with a previous study conducted on Tempranillo VN40 clone, in which two foliar treatments with the same seaweed extract were conducted (
                    <xref ref-type="bibr" rid="ref61">Zarraonaindia et al., 2023</xref>). </p>
                <sec id="h0-2-1--gene-expression-modulation-by-ro">
                    <title>2.1. Gene expression modulation by RO</title>
                    <p>Differential expression analysis was carried out on the targeted 89 genes (Table S3) following three applications of 
                        <italic>R. okamurae</italic> (RO) and Water treatment (W). The results revealed that the extract significantly enhanced the expression of three genes belonging to the PR protein group (PR3, PR4bis and PIN) and four other genes, each involved in a different functional group: CHI2 (only in RJ43), HSR-203J, GST1 and CAD2 genes related to the flavonoid pathway, lipoxygenase pathway, redox status regulation and cell wall reinforcement, respectively (Figure 2A). In addition, the applied extended gene expression analysis using NeoViGen microarray strategy (compared to the 15 targeted genes in 
                        <xref ref-type="bibr" rid="ref61">Zarraonaindia et al. (2023)</xref>) allowed down-regulated genes to be identified after seaweed applications, among which PR8, PR12, CHORS2, CAGT, EDS1b and SAPB2a showed the highest inhibition values, with log values (RO versus Water plants) close to -2 (Figure 2A). </p>
                    <p>
                        <fig>
                            <label>Figure 2. Transcript levels of defense-related genes (log transformed) in grapevine leaves induced by applications of 
                                <italic>Rugulopteryx</italic> 
                                <italic>okamurae</italic> (S1, 1dPB) in A) and by 
                                <italic>Plasmopara</italic> 
                                <italic>viticola</italic> (S2, 1dPI) in B) relative to the water treated samples. Only genes with a log-transformed-fold change greater than 1.5 or less than -1.5 relative to water for any clone/sampling point are shown. Black bars refer to the VN40 clone and grey bars refer to the RJ43 clone. The values represent 5 biological replicates per treatment/clone. The error bars indicate the variation range of the Log2 FC values calculated as follows: ((Log2 FC (RO vs Water plants) x (RO ∆Cq variation coefficient (SD/∣mean∣) + Water plants ∆Cq variation coefficient))/ 100.</label>
                            <graphic ns2:href="media/image2.png"/>
                        </fig>
                    </p>
                    <p>The GST1 gene, commonly associated with ascorbate peroxidase (APX) levels (
                        <xref ref-type="bibr" rid="ref25">Gullner et al., 2018</xref>), exhibited the highest induction values following RO treatment, with a 4.62-fold change in VN40 and a 4.83-fold change in RJ43, consistent with previous findings in Zarraonaindia 
                        <italic>et al</italic>. (2023), which showed that RO extract preferentially induced jasmonic acid (JA) related genes, while inhibiting salicylic acid (SA) responsive genes. In particular, PR3, PR4bis and PIN (gene function of PR6), whose expressions are known to be strongly dependent on JA signalling (
                        <xref ref-type="bibr" rid="ref3">Ali et al., 2018</xref>; 
                        <xref ref-type="bibr" rid="ref59">Van Loon et al., 2006</xref>), were significantly higher in RO-treated leaves. Moreover, the expression of HSR-203J, known to be enhanced by JA signalling (
                        <xref ref-type="bibr" rid="ref15">Dufour et al., 2016</xref>), was also increased by RO treatments. On the other hand, RO was found to down-regulate PR-8, PR-12, PR-14, EDS1b, SAMPT1 and SAPB2a genes, which are known to be related to SA signalling (
                        <xref ref-type="bibr" rid="ref1">Adrian et al., 2012</xref>; 
                        <xref ref-type="bibr" rid="ref5">Bodin et al., 2020</xref>; 
                        <xref ref-type="bibr" rid="ref15">Dufour et al., 2016</xref>); this thus corroborates the antagonistic regulation of both JA and SA pathways suggested by other authors (
                        <xref ref-type="bibr" rid="ref49">Paolacci et al., 2017</xref>).</p>
                    <p>Both clones showed similar upregulated and downregulated gene profiles after 
                        <italic>R. okamurae</italic> treatments. However, overall, VN40 plants showed a more consistent downregulation of five genes, three of which were related to SA pathway ones (PR8, PR12 and SAPB2a), a nitrate transporter (NrT2) and a glycosyltransferase (CAGT). By contrast, in five cases (PR3, PIN, CHI2, GST1 and CAD2) upregulation was more pronounced in the RJ43 clone (Figure 2A). CAD2 expression, involved in the biosynthesis of monolignols (main component of lignin), was significantly upregulated by RO, especially in RJ43 plants. Lignans play an important role in plant defense and, indeed, one of the characteristic responses of plants to injury and disease is the reinforcement of cell walls (
                        <xref ref-type="bibr" rid="ref44">Ninkuu et al., 2022</xref>). Therefore, RO treated plants, and particularly the RJ43 clone, might have higher protection responses than untreated plants in the event of a pathogen infection.</p>
                </sec>
                <sec id="h3-2-2--induction-of-phenolic-compounds-by-ro">
                    <title>2.2. Induction of phenolic compounds by RO</title>
                    <p>The concentrations of polyphenols in the leaves of Tempranillo VN40 plants increased after treatment with 
                        <italic>R. okamurae</italic> (Figure 3A). The concentrations of caftaric acid and coutaric acids were significantly higher in RO- and BB-treated plants than in the control (water). Consistent with this, at this sampling point, significant increases in stilbenes (total piceid and 
                        <italic>E</italic>-resveratrol) were also observed in RJ43 plants relative to the control ones (Figure 3B). Viniferins, on the other hand, were detected under the detection limits. The same stilbenes as those found in 
                        <xref ref-type="bibr" rid="ref61">Zarraonaindia et al. (2023)</xref> were identified, albeit in higher concentrations, which is probably due to the additional third RO treatment applied in the present experiment.</p>
                    <p>
                        <fig>
                            <label>Figure 3. Polyphenol content in grapevine leaves after treatment (S
                                <sub>1</sub>, 1dpB) of A) VN40 clone plants, and B) RJ43 clone plants. Different letters above the bars indicate significant differences between treatments for each compound (ANOVA,
                                <italic> p</italic> &lt; 0.05).</label>
                            <graphic ns2:href="media/image3.png"/>
                        </fig>
                    </p>
                    <p>In general, polyphenols reached higher concentrations in VN40 leaves than in RJ43 without any significant differences. However, stilbenes, key compounds for responding to biotic stresses, reached similar concentrations in RO leaves for both clones, which suggests that biostimulation with regards to these compounds is similar in these clones. Flavonols (quercetin 3-glucoside + glucuronide and myricetin 3-glucoside) were not affected by the treatments, which corraborates our previous results in Zarraonaindia 
                        <italic>et al</italic>. (2023). An increase in flavonoids has previously been observed after seaweed treatment in the berries of Tempranillo blanco plants (
                        <xref ref-type="bibr" rid="ref13">Cataldo et al., 2022</xref>), but, to our knowledge, such an increase has not been associated with leaves. In general, the results regarding phenolic compounds indicate that both clones are equally prepared for a possible infection.</p>
                </sec>
                <sec id="h3-2-3--activity-modulation-of-the-antioxidant-enzyme-system-by-ro">
                    <title>2.3. Activity modulation of the antioxidant enzyme system by RO</title>
                    <p>SOD, APX and GR enzymes have been described as being related to defense mechanisms in plants. Generally, biostimulants derived from algae are known to induce the antioxidant system (
                        <xref ref-type="bibr" rid="ref20">García-Sánchez et al., 2022</xref>). However, in VN40 plants, SOD and GR activities did not show any significant differences between the three different treatments (W, BB and RO). By contrast, APX activity significantly increased for RO- and BB-treated plants (1.6 and 2.9 times higher than that of water respectively; Figure 4A), indicating that both treatments were able to reduce H
                        <sub>2</sub>O
                        <sub>2</sub>. This could be related to a H
                        <sub>2</sub>O
                        <sub>2</sub> signaling mediated by the biostimulation, preparing VN40 for any potential stress. At the end of signalling, H
                        <sub>2</sub>O
                        <sub>2</sub> must be metabolised, for which APX is needed. This is an interesting strategy, since H
                        <sub>2</sub>O
                        <sub>2</sub> is a reactive oxygen species which can damage plant cells (
                        <xref ref-type="bibr" rid="ref27">Hasanuzzaman &amp; Fujita, 2022</xref>). Importantly, the already high intrinsic SOD values found in the VN40 plants indicate that this clone relies heavily on H
                        <sub>2</sub>O
                        <sub>2</sub> signalling and regulation in its basal state (under no biotic or abiotic stress). According to Pérez-López
                        <italic> et al</italic>. (2015), high SOD activity could be considered an advantage as it helps plants protect themselves against potential oxidative damage. Therefore, overall, this high basal SOD could be the reason why the antioxidant system response to biostimulation was less pronounced in VN40 plants. Unfortunately, no reference was found in the literature to the effect of biostimulants on 
                        <italic>Vitis vinifera </italic>antioxidant enzymes. However, by comparing our results with those obtained under non-stress conditions, it can be noted that the SOD values observed in our study are higher than those reported for SOD in non-stressed Tempranillo (Salazar-Parra et al., 2012) and Öküzgözü (
                        <xref ref-type="bibr" rid="ref47">Özden et al., 2009</xref>). </p>
                    <p>
                        <fig>
                            <label>Figure 4. Antioxidant enzymes in treated leaves at different sampling times: A) and B) after 24 hours of treatment applications (S1, 1dPB) for VN40 and RJ43 respectively, C) and D) after 24 hours of 
                                <italic>Plasmopara</italic> 
                                <italic>viticola</italic> inoculation (S2, 1dPI) for VN40 and RJ43 respectively. Different letters above the bars denote significant differences between treatments (ANOVA, 
                                <italic>p</italic> &lt; 0.05) within each compound.</label>
                            <graphic ns2:href="media/image4.png"/>
                        </fig>
                    </p>
                    <p>By contrast, all the enzymes studied in RJ43 plants were affected by the RO treatment. SOD activity decreased 2.2- and 1.8-fold for RO and BB treatments relative to the control plants, respectively. Meanwhile, for the RO and BB treatments, there was an approximate 1.9-fold increase in APX and 1.7- and 1.3-fold increase in GR (Figure 4B). The increase in GR in RJ43 plants allows them to regenerate the important antioxidant molecule glutathione and increase the ability of plants to prepare for an oncoming stress (
                        <xref ref-type="bibr" rid="ref45">Noctor &amp; Foyer, 1998</xref>). It is important to note that RJ43 seems to rely on APX rather than SOD when reducing the accumulation of H
                        <sub>2</sub>O
                        <sub>2</sub>. </p>
                    <p>Thus, our results indicate that each clone modulates antioxidant enzymes differently after RO biostimulation, with the RJ43 clone modulation benefiting more, since GR is activated to a greater extent than in the VN40 clone. However, it should be noted that elicitation may have been lower in the VN40 plants due to their already high basal SOD activity.</p>
                </sec>
                <sec id="h3-2-4--modifications-to-photosynthetic-pigments-and-photochemical-parameters-by-ro">
                    <title>2.4. Modifications to photosynthetic pigments and photochemical parameters by RO</title>
                    <p>While the composition of photosynthetic pigments in RJ43 clone plants were not affected by treatments, VN40 clone plants decreased both chlorophyll a and b, as well as carotenes and xanthophylls, which is in line with the SPAD results (Table 1). Conversely, maximum photochemical efficiency (
                        <italic>φ
                            <sub>PSII</sub>
                        </italic>) decreased in the RJ43 plants, while the VN40 clone maintained it at levels similar to those of the control samples (W), despite significantly decreasing the greenness (SPAD) (Table 1). Previous studies have shown that the application of seaweeds in general, and the brown macroalgae 
                        <italic>Ascophyllum nodosum </italic>in particular, results in increased chlorophyll content in the leaves of different plants (
                        <italic>e.g</italic>., tomato, dwarf French bean, wheat, barley and maize); this is likely due to the inhibition of chlorophyll degradation, which is caused partly by compounds, such as betaines, present in the seaweed extracts (
                        <xref ref-type="bibr" rid="ref57">Sangha et al., 2014</xref>). The 
                        <italic>R. okamurae</italic> extract used here does not contain betaine lipids, as was revealed by biochemical characterisation conducted by 
                        <xref ref-type="bibr" rid="ref14">Córdoba-Granados et al. (2024)</xref>, and as would be expected for an aqueous extract, which might justify the differences found with the aforementioned publication. </p>
                    <p>In general, our results revealed no effect, or just slight negative effects (depending on the clone) of the RO treatment on photosynthetic pigments and the photochemical parameters associated with them. However, it is worth mentioning that the VN40 plants were at a more advanced phenological stage than the RJ43 plants, which may also have contributed to the reduction in photosynthetic pigments observed in VN40. Nonetheless, the reduction was slight, and the values were still within the established range representing good photosynthesis activity in grapevine leaves (
                        <xref ref-type="bibr" rid="ref12">Casanova-Gascon et al., 2018</xref>).</p>
                </sec>
            </sec>
            <sec id="h2-3--post-inoculation-state--s2--1dpi---responses-to-plasmopara-viticola">
                <title>3. Post inoculation state (S
                    <sub>2</sub>, 1dPI): responses to 
                    <italic>Plasmopara</italic> 
                    <italic>viticola</italic>
                </title>
                <p>Grapevine resistance to downy mildew has a large genotypic component and defense reactions occur with variable promptness and magnitude, timing and intensity. Generally, it is assumed that highly susceptible grapevines show a weak defense response to 
                    <italic>P. viticola</italic> infection (
                    <xref ref-type="bibr" rid="ref51">Perazzolli et al., 2012</xref>), and therefore they rely heavily on external compounds to help withstand disease. Copper-based products directly target the pathogen, making them the most common control measure. By contrast, it is less common for seaweed to be directly toxic to fungi, their protective efficiency coming rather from their ability to elicit defense mechanisms in the plant. In this section, the effect of 
                    <italic>P. viticola</italic> at the molecular and metabolic levels is evaluated in Tempranillo clones (RJ43 and VN40) in order to assess the effectiveness of 
                    <italic>R. okamurae</italic> as an elicitor against downy mildew.</p>
                <sec id="h0-3-1--gene-expression-modulation-after-plasmopara-viticola-inoculation">
                    <title>3.1. Gene expression modulation after 
                        <italic>Plasmopara</italic> 
                        <italic>viticola</italic> inoculation</title>
                    <p>The expression levels of most RO-modulated genes either remained stable or decreased at S
                        <sub>2 </sub>(1dPI) compared to S
                        <sub>1</sub> (1dPB), a pattern that could be due to Tempranillo's inherent sensitivity to 
                        <italic>P. viticola</italic>. Tempranillo’s response to infection can usually be expected to be moderate, although 
                        <italic>P. viticola</italic> is known to be able to modulate JA pathway-related genes in certain grapevine varieties (
                        <xref ref-type="bibr" rid="ref17">Figueiredo et al., 2015</xref>; 
                        <xref ref-type="bibr" rid="ref24">Guerreiro et al., 2016</xref>). In this study, in the RJ43 clone, six out of the seven RO-induced genes, particularly the PR4bis gene in the JA pathway, showed lower expression values after inoculation (Figure 2B; Table 2). Interestingly, while the expression levels also decreased in RO-treated VN40 plants, CHI2 expression markedly increased (332 %-fold change from S
                        <sub>2</sub> to S
                        <sub>1</sub>), suggesting that this gene was primed by the seaweed application.</p>
                    <p>Remarkably, while the inhibition of SA-related genes was not maintained after infection in the VN40 plants, their downregulation was strengthened in the RJ43 clone (Figure 2B). Gene expression downregulation was particularly marked in PR12 and NrT2, as well as in PR8 and CALS, in RJ43 after 
                        <italic>P. viticola</italic> inoculation; this suggests that the extract was able to prime the plants, and therefore the inhibition of the expression of these genes became stronger when the grapevines were further subjected to biotic stress. Several stimuli have been shown to prime plants for an improved response to future stress, thereby triggering earlier, faster and/or stronger responses (
                        <xref ref-type="bibr" rid="ref28">Hilker et al., 2016</xref>; 
                        <xref ref-type="bibr" rid="ref40">Mauch-Mani et al., 2017</xref>), among which seaweed extracts can be highlighted (
                        <xref ref-type="bibr" rid="ref29">Islam et al., 2021</xref>). It should be noted that elicitors may also be potentially used in defense priming strategies by downregulating certain genes (
                        <xref ref-type="bibr" rid="ref37">Landi et al., 2017</xref>), as is the case of susceptibility genes (S-genes) (
                        <xref ref-type="bibr" rid="ref38">Liu et al., 2022</xref>). However, to our knowledge, no previous evidence of downregulation associated with the priming of plant defense response genes has been described in the literature to date; therefore, the downregulation observed for PR12, NrT2, PR8 and CALS in the previously biostimulated plants requires further validation. </p>
                </sec>
                <sec id="h3-3-2--concentrations-of-phenolic-compounds-after-plasmopara-viticola-inoculation">
                    <title>3.2. Concentrations of phenolic compounds after 
                        <italic>Plasmopara</italic> 
                        <italic>viticola</italic> inoculation</title>
                    <p>Total polyphenol concentration increased in all plants after infection; however, no clear trend was observed between treatments or clones (data not shown). Only the RJ43 clone plants exhibited an increase in total piceid, this enrichment being more acute in the plants previously treated with seaweed (1.15-fold for W, 1.31-fold for BB and 1.84-fold for RO). However, piceids, in their glucoside form, are known to be inactive against 
                        <italic>P. viticola</italic> (
                        <xref ref-type="bibr" rid="ref19">Gabaston et al., 2017</xref>). Other stilbenes have been directly correlated with resistance to fungal disease, and differences in the content and accumulation of stilbenes between susceptible and resistant genotypes is known to be key to overcoming infections (
                        <xref ref-type="bibr" rid="ref10">Burdziej et al., 2021</xref>; 
                        <xref ref-type="bibr" rid="ref50">Paolocci et al., 2014</xref>; 
                        <xref ref-type="bibr" rid="ref60">Vrhovsek et al., 2012</xref>). The biosynthesis of complex stilbenes in grapevine leaves is typically observed during infection around six days after inoculation (
                        <xref ref-type="bibr" rid="ref60">Vrhovsek et al., 2012</xref>; 
                        <xref ref-type="bibr" rid="ref10">Burdziej et al., 2021</xref>), which may explain the low concentrations and differences observed in our early sampling; 
                        <italic>i.e</italic>., just 24 hours after infection. Despite this early sampling, ε-viniferin and ω-viniferin were detected in both clone plants in all the treatments (W, BB, RO), ε-viniferin concentration being significantly higher in the RO samples of RJ43 plants (Table S4). Susceptible genotypes are thought to accumulate resveratrol and piceid during infection, while other stilbenes, such as ε- and δ-viniferins, have been found to be mostly produced in resistant genotypes (
                        <xref ref-type="bibr" rid="ref7">Boso et al., 2012</xref>; 
                        <xref ref-type="bibr" rid="ref50">Paolocci et al., 2014</xref>). Therefore, the increase in viniferins observed in the present study suggests that, despite Tempranillo being considered a susceptible variety, the clones studied here were exhibiting a certain level of resistance to infection. Further samplings at later time-points would provide valuable insights into the extent of this resistance.</p>
                </sec>
                <sec id="h3-3-3--antioxidant-system-activity-modulation-after-plasmopara-viticola-infection">
                    <title>3.3. Antioxidant system activity modulation after 
                        <italic>Plasmopara</italic> 
                        <italic>viticola</italic> infection</title>
                    <p>In both clones, SOD activity decreased with respect to the S
                        <sub>1</sub> sampling point, especially in plants that had not been previously biostimulated, indicating that the oomycete was likely downregulating SOD activity in order to inhibit the plants’ defense mechanisms (
                        <xref ref-type="bibr" rid="ref43">Nascimento et al., 2019</xref>). Interestingly, in the VN40 clone, plants previously elicited by RO showed an increase of 138 %, 93 % and 73 % for SOD, APX and GR respectively in their leaves, relative to the water-treated plants. In the RJ43 clone, however, RO-biostimulated plants did not alter SOD in response to 
                        <italic>P. viticola</italic> inoculation, but APX and GR activities increased by 112 % and 57 % relative to the water samples. The significant induction of APX correlated with the pronounced overexpression of the GST1 gene (Figure 2A) in the RJ43 clone, suggesting that the ROS scavenging and detoxification mechanisms triggered by RO application in S
                        <sub>1</sub> were further enhanced following 
                        <italic>P. viticola</italic> infection, thus helping to protect the cells from the combined signal induced by both the seaweed and the pathogen.</p>
                    <p>Overall, the results indicate that RO biostimulated the plant´s antioxidant metabolism, which was activated after pathogen inoculation, maintaining most of the enzymes at high values in both clones. This indicates that both clones potentially reduce the development capacity of the oomycete. The high SOD values in VN40 could promote some resistance, as high H
                        <sub>2</sub>O
                        <sub>2</sub> levels are toxic for fungi and prevent the development of the pathogen. In fact, reactive oxygen species play an important role in pathogen resistance by directly strengthening host cell walls via the cross-linking of glycoproteins, lipid peroxidation and the activation of ROS-signalling networks, leading to the establishment of a resistance response (
                        <xref ref-type="bibr" rid="ref18">Figueiredo et al., 2017</xref>). However, as mentioned previously, H
                        <sub>2</sub>0
                        <sub>2</sub> could also be toxic for plants (
                        <xref ref-type="bibr" rid="ref27">Hasanuzzaman &amp; Fujita, 2022</xref>; 
                        <xref ref-type="bibr" rid="ref41">Mittler et al., 2004</xref>); therefore, we hypothesise that to counteract it, VN40 regulated the high H
                        <sub>2</sub>0
                        <sub>2</sub> levels with a higher activation of APX. These strategies seem to allow the delicate equilibrium between ROS production and scavenging to be maintained (
                        <xref ref-type="bibr" rid="ref41">Mittler et al., 2004</xref>). </p>
                    <p>Thus, we can conclude that 
                        <italic>R. okamurae</italic> seaweed treatment was able to prime both clones of the 
                        <italic>Vitis vinifera</italic> plants, allowing the plants to respond more efficiently when the infection occurred than the plants that had not been previously biostimulated by 
                        <italic>R. okamurae</italic>.</p>
                </sec>
                <sec id="h3-3-4--modifications-to-photosynthetic-pigments-and-photochemical-parameters-by-plasmopara-viticola">
                    <title>3.4. Modifications to photosynthetic pigments and photochemical parameters by 
                        <italic>Plasmopara</italic> 
                        <italic>viticola</italic>
                    </title>
                    <p>Few significant differences were found in terms of pigments and photochemical parameters between treatments after infection (S
                        <sub>2</sub>). The VN40 clone plants treated with RO did not show any significant differences when compared to the water treated plants (Table S5). With regards to the RJ43 clone plants, no differences in terms of pigments, SPAD or photosynthetic efficiency were found between treatments; this demonstrates that any negative effect observed at the biostimulation sampling point (S
                        <sub>1</sub>) (Table 3) was transitory and quickly reverted.</p>
                    <p>
                        <italic>P. viticola</italic> has been shown to affect the photosynthesis of susceptible grapevine cultivars by reducing the diffusion of CO
                        <sub>2</sub> in leaf mesophyll (
                        <xref ref-type="bibr" rid="ref32">Jermini et al., 2020</xref>) and by inhibiting the enzymes involved in chlorophyll synthesis (
                        <xref ref-type="bibr" rid="ref46">Nogueira Júnior et al., 2020</xref>). However, in the present study, the sampling was performed one day after pathogen inoculation, and therefore the above effects had not yet been observed.</p>
                </sec>
            </sec>
            <sec id="h2-4--evaluation-of-the-protection-conferred-by-rugulopteryx-okamurae-extract-against-plasmopara-viticola">
                <title>4. Evaluation of the protection conferred by 
                    <italic>Rugulopteryx</italic> 
                    <italic>okamurae</italic> extract against 
                    <italic>Plasmopara</italic> 
                    <italic>viticola</italic>
                </title>
                <p>The protective efficiency of the copper-based treatment (BB) was higher than that of RO and occurred earlier in the period of infection: by days 3 and 10 for the incidence of clone VN40 and RJ43, respectively, and by day 10 for the severity of both clones (Figure 5). Moreover, a different level of protection was observed depending on the clone, which was more evident by day 17. While in VN40 the incidence and severity index were not significantly different between RO and W samples, in RO-treated RJ43 plants a disease reduction was observed, with 20 % incidence reduction and 25% severity reduction, both of which were significant. All these results align with the findings observed for this clone during both the biostimulation (S
                    <sub>1</sub>) and post-inoculation stages (S
                    <sub>2</sub>), which had already indicated that RO treatment elicited a higher response in RJ43 clone plants. It is widely known that clones show different susceptibility to fungal diseases (
                    <xref ref-type="bibr" rid="ref42">Molitor et al., 2018</xref>), as is the case for varieties (
                    <xref ref-type="bibr" rid="ref9">Boso et al., 2023</xref>). In fact, targeted clone selection represents an integral tool in the control strategy in Integrated Pest Management contributing to pesticide reduction in viticulture. </p>
                <p>
                    <fig>
                        <label>Figure 5. Downey mildew incidence and severity indexes on two Tempranillo clones leaves: A) and B) for VN40; C) and D) for RJ43, respectively. Different letters above the bars denote significant differences between treatments (
                            <italic>p</italic> &lt; 0.05) at each inspected day.</label>
                        <graphic ns2:href="media/image5.png"/>
                    </fig>
                </p>
                <p>Because most research has been conducted 
                    <italic>in-vitro </italic>(
                    <italic>e.g</italic>., on leaf discs), few scientific studies report the efficacy of agricultural products at the whole-plant level under controlled conditions (reviewed by: 
                    <xref ref-type="bibr" rid="ref2">Adrian et al., 2024</xref>; 
                    <xref ref-type="bibr" rid="ref58">Taillis et al., 2022</xref>). Furthermore, while various commercial plant protection products are known for their ability to inhibit fungal infections in grapevine (
                    <xref ref-type="bibr" rid="ref39">Llamazares De Miguel et al., 2022</xref>), little is known about such ability in seaweed-based products. The 
                    <italic>R. okamurae</italic> aqueous extract applied here contained alginate, fucoidan and laminarin (
                    <xref ref-type="bibr" rid="ref14">Córdoba-Granados et al., 2024</xref>) that could in part be responsible for the elicitation and disease suppression observed, as polysaccharides have been previously demonstrated to have such activity. For instance, a crude extract of 
                    <italic>Ulva armoricana</italic> green seaweed, rich in the polysaccharide ulvan, showed anti-powdery mildew activity in the leaf disc and in the plant after several grapevine foliar treatments (
                    <xref ref-type="bibr" rid="ref31">Jaulneau et al., 2011</xref>). The treatment of grapevine plants with laminarin, a polysaccharide from the brown algae 
                    <italic>Laminaria digidata</italic>, was found to reduce the infection of 
                    <italic>Botrytis cinerea</italic> and 
                    <italic>P. viticola</italic> by 55 % and 75 %, respectively (
                    <xref ref-type="bibr" rid="ref4">Aziz et al., 2003</xref>). Therefore, the present work represents a stepping-stone towards understanding the capacity of seaweed to protect plants from disease in agriculture, and natural defense elicitation by 
                    <italic>R. okamurae</italic> extract was demonstrated. However, further studies are needed to determine the relationship between the conferred rate of protection by
                    <italic> R. okamurae</italic> and 
                    <italic>P. viticola</italic> disease progression, as the protection induced by natural elicitors could indeed be affected by the time interval between elicitation and pathogen attack, or the number of elicitation treatments given, among other factors. 	Comment by EMMA CANTOS VILLAR: I propose has been demonstrated (in the current paper)</p>
            </sec>
        </sec>
        <sec id="h1-conclusion">
            <title>Conclusion</title>
            <p>
                <italic>Rugulopteryx</italic> 
                <italic>okamurae</italic> extract (RO) was able to induce defense reactions in grapevine plants at both molecular and metabolic levels. Importantly, plants that had been previously treated with the seaweed responded more efficiently to 
                <italic>Plasmopara</italic> 
                <italic>viticola</italic> infection, leading to a reduction in the disease incidence and severity indexes. This suggests that 
                <italic>Rugulopteryx</italic> 
                <italic>okamurae</italic> elicitation was effective in priming plants, ultimately protecting them from the disease. The defense elicitation and extent of protection were however clone-dependent, being more effective in the tempranillo RJ43 clone plants. </p>
            <p>Overall, the results of this study contribute to the future development of sustainable products based on seaweed formulations, which could be used in environmentally friendly protection strategies in viticulture. Despite RO-mediated disease suppression being less effective than with the copper-based treatment, the seaweed aqueous extract still showed promise as a sustainable biocontrol candidate. Its use in combination with other conventional products would be advisable for more effective disease control, and it could contribute to reducing the reliance on and dosage of copper in viticulture, a growing necessity and a hot topic in the agriculture sector. Furthermore, the results of this study present an opportunity to valorise the invasive 
                <italic>R. okamurae</italic> seaweed by integrating it into a circular system. Further studies are required to characterise the bioactive compounds in the extract and to elucidate the precise mechanisms behind elicitation and disease suppression, given the complexity of the involved factors. Importantly, the differences in efficacy observed, even between clones, underscore the need to explore grapevine genomics and epigenomics further, extending research beyond grapevine variety.</p>
        </sec>
        <sec id="h1-acknowledgments">
            <title>Acknowledgments</title>
            <p>This research is supported by SEAWINES Project (PID2020-112644RR-C21 and -C22) ﬁnanced by MCIN/AEI/10.13039/501100011033. Juan José Córdoba-Granados thanks the support from PRE2021-100476 MICIU/AEI /10.13039/501100011033 and FSE+. Asier Cámara thanks the support from Ikertalent 2022 predoctoral programme financed by the Basque Government. Grant EQC2021-007261-P funded by MCIN/AEI/10.13039/501100011033 and by the European Union NextGenerationEU/PRTR.</p>
        </sec>
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